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NHLBI BioData Catalyst (BDC) Forums

Announcements 21

BDC Video Now Available

Posted by Amber Voght, almost 2 years ago
Last Reply by Amber Voght almost 2 years ago
Now Available: 2024-07-02 BioData Catalyst Ecosystem Release Notes

Posted by Paul Kerr, 3 months ago
Last Reply by Paul Kerr 3 months ago
Now Available: 2024-04-01 BioData Catalyst Ecosystem Release Notes

Posted by Paul Kerr, 6 months ago
Last Reply by Paul Kerr 6 months ago
February Community Hours: Materials and Downloads from 2/28/24

Posted by Nathalie Volkheimer, 7 months ago
Last Reply by Nathalie Volkheimer 7 months ago
Now Available: 2024-01-08 BioData Catalyst Ecosystem Release Notes

Posted by Paul Kerr, 9 months ago
Last Reply by Paul Kerr 9 months ago

See all 21 topics

Events 17

August 2023 Community Hours: Researcher Showcase with TOPMed Fellow Matthew Goodman, PhD

Posted by Kaleena Narwani, about 1 year ago
Last Reply by Kaleena Narwani about 1 year ago
May 2023 Community Hours: Newly Published Apps and Workflows

Posted by Amber Voght, over 1 year ago
Last Reply by Amber Voght over 1 year ago
April 2023 Community Hours: What to do While Waiting for Funding

Posted by Amber Voght, over 1 year ago
Last Reply by Amber Voght over 1 year ago
Feb 22 2023 Community Hours: Cloud Workflow Optimization and Researcher Showcase

Posted by Amber Voght, over 1 year ago
Last Reply by Amber Voght over 1 year ago
March 15 2023 Community Hours: Citations and Publications

Posted by Amber Voght, over 1 year ago
Last Reply by Amber Voght over 1 year ago

See all 17 topics

Community Forum 9

GWAS with Multinomial Regression

Posted by Cera Fisher, about 2 months ago
Last Reply by Cera Fisher about 2 months ago
Help with creating a CWL tool

Posted by Cera Fisher, 2 months ago
Last Reply by Cera Fisher 2 months ago
Multicollinearity among your covariates

Posted by Taskeen molin, 4 months ago
Last Reply by Taskeen molin 4 months ago
Meta-analyzing GENESIS results with MetaSKAT

Posted by Brandon Lê, about 1 year ago
Last Reply by Brandon Lê about 1 year ago
Ideas for open SDoH datasets

Posted by David Roberson, about 1 year ago
Last Reply by David Roberson about 1 year ago

See all 9 topics

Community Hours 39

September Community Hours: Materials and Notes from 9/18/2024

Posted by Nathalie Volkheimer, 10 days ago
Last Reply by Nathalie Volkheimer 10 days ago
August Community Hours: Materials and Notes from 8/21/2024

Posted by Nathalie Volkheimer, about 1 month ago
Last Reply by Nathalie Volkheimer about 1 month ago
July Community Hours: Materials and Notes from 07/17/2024

Posted by Nathalie Volkheimer, 3 months ago
Last Reply by Nathalie Volkheimer 3 months ago
June Community Hours: Materials and Notes from 6/12/2024

Posted by Nathalie Volkheimer, 4 months ago
Last Reply by Nathalie Volkheimer 4 months ago
May Community Hours: Materials and Notes from 5/22/2024

Posted by Nathalie Volkheimer, 4 months ago
Last Reply by Nathalie Volkheimer 4 months ago

See all 39 topics

RMIP Resource Hub 1

We've moved

Posted by Jeran Stratford, 3 months ago
Last Reply by Jeran Stratford 3 months ago

HeartShare on BDC 6

Orientation Q&A: What are the compute and storage costs? How can I minimize costs?

Posted by Nathalie Volkheimer, about 1 month ago
Last Reply by Nathalie Volkheimer about 1 month ago
Orientation Q&A: Is there a section of the project where I can work on projects privately, without the rest of the consortium?

Posted by Nathalie Volkheimer, about 1 month ago
Last Reply by Nathalie Volkheimer about 1 month ago
Orientation Q&A: How do I add myself to a project?

Posted by Nathalie Volkheimer, about 1 month ago
Last Reply by Nathalie Volkheimer about 1 month ago
Orientation Q&A: Do investigators require an eRA Commons Account?

Posted by Nathalie Volkheimer, about 1 month ago
Last Reply by Nathalie Volkheimer about 1 month ago
HeartShare on BDC Orientation Materials: August 23 2024 Meeting

Posted by Nathalie Volkheimer, about 1 month ago
Last Reply by Nathalie Volkheimer about 1 month ago

See all 6 topics

TOPMed Fellows 2

Issue with Overlapping Variants in TOPMed Cohorts Using WGS Data

Posted by Yasaman Jamalipour Soofi, about 1 month ago
Last Reply by Yasaman Jamalipour Soofi about 1 month ago
TOPMed Fellowship Orientation

Posted by Amber Voght, 4 months ago
Last Reply by Amber Voght 4 months ago

RECOVER on BDC 0

RMIP Resource Hub

Welcome! Start here. 9

Frequently Asked Questions

Posted by Jeran Stratford, 2 months ago
Last Reply by Jeran Stratford 2 months ago
Welcome!

Posted by Jeran Stratford, 4 months ago
Last Reply by Jeran Stratford 4 months ago
RMIP - Data Management Plan

Posted by Jeran Stratford, 5 months ago
Last Reply by Jeran Stratford 5 months ago
Data Management Core Office Hours

Posted by Jeran Stratford, about 2 months ago
Last Reply by Jeran Stratford about 2 months ago
BDC Orientation Recording Now Available

Posted by Jeran Stratford, about 2 months ago
Last Reply by Jeran Stratford about 2 months ago

See all 9 topics

Phase 1 - Preparation 2

De-Identification Guidance

Posted by Mike Enger, 4 months ago
Last Reply by Jeran Stratford about 17 hours ago
Supporting Documentation Guidance

Posted by Mike Enger, 3 months ago
Last Reply by Mike Enger 3 months ago

Phase 2 - Aggregation 5

File Tagging Guidance

Posted by Mike Enger, 3 months ago
Last Reply by Mike Enger 3 months ago
Uploading Data to BDC

Posted by Mike Enger, 4 months ago
Last Reply by Mike Enger 4 months ago
What is Raw Data?

Posted by Mike Enger, 4 months ago
Last Reply by Mike Enger 4 months ago
File Naming Guidance

Posted by Mike Enger, 4 months ago
Last Reply by Mike Enger 4 months ago
RMIP Data Landscape Codes

Posted by Jeran Stratford, 4 months ago
Last Reply by Jeran Stratford 4 months ago

Phase 3 - Harmonization 1

Harmonizing Data on BDC

Posted by Mike Enger, 3 months ago
Last Reply by Mike Enger 3 months ago

Documents and Templates 6

Documents and Templates

Posted by Jeran Stratford, 4 months ago
Last Reply by Jeran Stratford 4 months ago
Template - Seven Bridges Project

Posted by Mike Enger, 4 months ago
Last Reply by Mike Enger 4 months ago
Template - Data Manifest

Posted by Jeran Stratford, 4 months ago
Last Reply by Jeran Stratford 4 months ago
Template - Sample Manifest

Posted by Jeran Stratford, 4 months ago
Last Reply by Jeran Stratford 4 months ago
Template - Data Dictionary

Posted by Jeran Stratford, 4 months ago
Last Reply by Jeran Stratford 4 months ago

See all 6 topics

Tutorials 9

Suggest a Tutorial Video

Posted by Mike Enger, about 1 month ago
Last Reply by Mike Enger about 1 month ago
Tutorials Index

Posted by Jeran Stratford, 4 months ago
Last Reply by Jeran Stratford 4 months ago
Tutorial Video - File Tagging

Posted by Mike Enger, 21 days ago
Last Reply by Mike Enger 21 days ago
Billing on BDC

Posted by Mike Enger, 3 months ago
Last Reply by Mike Enger 3 months ago
Copying Files Between Projects

Posted by Mike Enger, 3 months ago
Last Reply by Mike Enger 3 months ago

See all 9 topics

Applications 10

Applications

Posted by Mike Enger, 3 months ago
Last Reply by Mike Enger 3 months ago
Application - Bulk RNAseq Harmonization Workflow

Posted by Mike Enger, 4 months ago
Last Reply by Mike Enger 4 months ago
Application - Sanger Sequencing Harmonization Tool

Posted by Mike Enger, 4 months ago
Last Reply by Mike Enger 4 months ago
Application - Single Cell Mass Cytometry Harmonization Tool

Posted by Mike Enger, 4 months ago
Last Reply by Mike Enger 4 months ago
Application - Macrophage Polarization Harmonization Tool

Posted by Mike Enger, 4 months ago
Last Reply by Mike Enger 4 months ago

See all 10 topics

Data Standards 7

Data Standards

Posted by Jeran Stratford, 3 months ago
Last Reply by Jeran Stratford 3 months ago
Data Standards For Clinical and Preclinical Data

Posted by Jeran Stratford, 5 months ago
Last Reply by Jeran Stratford 5 months ago
Data Standards For Imaging

Posted by Jeran Stratford, 5 months ago
Last Reply by Jeran Stratford 5 months ago
Data Standards For Electrophysiology Assays

Posted by Jeran Stratford, 5 months ago
Last Reply by Jeran Stratford 5 months ago
Data Standards For Laboratory Assays

Posted by Jeran Stratford, 5 months ago
Last Reply by Jeran Stratford 5 months ago

See all 7 topics

RMIP - BioData Catalyst Monthly Updates 1

Welcome to the Updates Forum

Posted by Mike Enger, 18 days ago
Last Reply by Mike Enger 18 days ago

Workshops & Presentations

Howard University Workshops 6

2023 Spring Bioinformatics Course

Posted by David Roberson, over 1 year ago
Last Reply by David Roberson over 1 year ago
Feedback Survey

Posted by Amber Voght, almost 2 years ago
Last Reply by Amber Voght almost 2 years ago
Day 2 Recording

Posted by Amber Voght, almost 2 years ago
Last Reply by Amber Voght almost 2 years ago
Day 1 Recording

Posted by Amber Voght, almost 2 years ago
Last Reply by Amber Voght almost 2 years ago
Welcome - Introductions, Slides, and Meeting Info

Posted by Amber Voght, almost 2 years ago
Last Reply by Aarthi Krishnan almost 2 years ago

See all 6 topics

CHARGE Workshop, April 27 3

Welcome!

Posted by Amber Voght, over 2 years ago
Last Reply by Amber Voght over 2 years ago
Full Workshop Materials

Posted by Amber Voght, over 2 years ago
Last Reply by Amber Voght over 2 years ago
Getting added to the Seven Bridges CHARGE billing group

Posted by David Roberson, over 2 years ago
Last Reply by David Roberson over 2 years ago

NDSA Workshop: Starting Cloud-Based Research on BDC 9

Welcome and Introductions

Posted by Amber Voght, over 1 year ago
Last Reply by Widodo Samyono about 1 year ago
Slides and Meeting Info

Posted by Amber Voght, over 1 year ago
Last Reply by David Roberson about 1 year ago
Resources for eRA Commons and dbGaP Access

Posted by Cera Fisher, about 1 year ago
Last Reply by Cera Fisher about 1 year ago
Ideas for open SDoH datasets

Posted by David Roberson, about 1 year ago
Last Reply by David Roberson about 1 year ago
New software tools?

Posted by David Roberson, about 1 year ago
Last Reply by David Roberson about 1 year ago

See all 9 topics

PRIDE 1

Introduction to BDC, 06/13/2023

Posted by Amber Voght, over 1 year ago
Last Reply by Amber Voght over 1 year ago

HeartShare Northwestern 1

Northwestern Onboarding Module 01: Platform Essentials

Posted by David Roberson, about 1 year ago
Last Reply by David Roberson about 1 year ago

PCGC Fellows 4

Introductory Session, 09/26/2023

Posted by Amber Voght, about 1 year ago
Last Reply by Cera Fisher about 1 year ago
Seven Bridges Office Hours

Posted by Amber Voght, about 1 year ago
Last Reply by Amber Voght about 1 year ago
Request Pilot Credits

Posted by Amber Voght, 12 months ago
Last Reply by Archana Rai 12 months ago
Seven Bridges Account Instructions

Posted by Amber Voght, about 1 year ago
Last Reply by Amber Voght about 1 year ago