Discussions : BioData Catalyst

Community forums

Start a new topic

NHLBI BioData Catalyst (BDC) Forums

Announcements 21

BDC Video Now Available

Posted by Amber Voght, over 1 year ago
Last Reply by Amber Voght over 1 year ago
Now Available: 2024-07-02 BioData Catalyst Ecosystem Release Notes

Posted by Paul Kerr, 23 days ago
Last Reply by Paul Kerr 23 days ago
Now Available: 2024-04-01 BioData Catalyst Ecosystem Release Notes

Posted by Paul Kerr, 4 months ago
Last Reply by Paul Kerr 4 months ago
February Community Hours: Materials and Downloads from 2/28/24

Posted by Nathalie Volkheimer, 5 months ago
Last Reply by Nathalie Volkheimer 5 months ago
Now Available: 2024-01-08 BioData Catalyst Ecosystem Release Notes

Posted by Paul Kerr, 7 months ago
Last Reply by Paul Kerr 7 months ago

See all 21 topics

Events 17

August 2023 Community Hours: Researcher Showcase with TOPMed Fellow Matthew Goodman, PhD

Posted by Kaleena Narwani, 12 months ago
Last Reply by Kaleena Narwani 12 months ago
May 2023 Community Hours: Newly Published Apps and Workflows

Posted by Amber Voght, about 1 year ago
Last Reply by Amber Voght about 1 year ago
April 2023 Community Hours: What to do While Waiting for Funding

Posted by Amber Voght, about 1 year ago
Last Reply by Amber Voght about 1 year ago
Feb 22 2023 Community Hours: Cloud Workflow Optimization and Researcher Showcase

Posted by Amber Voght, over 1 year ago
Last Reply by Amber Voght about 1 year ago
March 15 2023 Community Hours: Citations and Publications

Posted by Amber Voght, about 1 year ago
Last Reply by Amber Voght about 1 year ago

See all 17 topics

Community Forum 8

Help with creating a CWL tool

Posted by Cera Fisher, about 3 hours ago
Last Reply by Cera Fisher about 3 hours ago
Multicollinearity among your covariates

Posted by Taskeen molin, about 1 month ago
Last Reply by Taskeen molin about 1 month ago
Meta-analyzing GENESIS results with MetaSKAT

Posted by Brandon Lê, 11 months ago
Last Reply by Brandon Lê 11 months ago
Ideas for open SDoH datasets

Posted by David Roberson, about 1 year ago
Last Reply by David Roberson about 1 year ago
Help plotting PCAIR outputs

Posted by David Roberson, about 1 year ago
Last Reply by Adrienne M Stilp about 1 year ago

See all 8 topics

Community Hours 37

July Community Hours: Materials and Notes from 07/17/2024

Posted by Nathalie Volkheimer, 5 days ago
Last Reply by Nathalie Volkheimer 5 days ago
June Community Hours: Materials and Notes from 6/12/2024

Posted by Nathalie Volkheimer, about 1 month ago
Last Reply by Nathalie Volkheimer about 1 month ago
May Community Hours: Materials and Notes from 5/22/2024

Posted by Nathalie Volkheimer, about 2 months ago
Last Reply by Nathalie Volkheimer about 2 months ago
April Community Hours: Links, Videos and Materials from 4/17/2024

Posted by Nathalie Volkheimer, 3 months ago
Last Reply by Nathalie Volkheimer 3 months ago
March Community Hours: Links, Videos and Materials from 3/13/2024

Posted by Nathalie Volkheimer, 4 months ago
Last Reply by Nathalie Volkheimer 4 months ago

See all 37 topics

RMIP Resource Hub 1

We've moved

Posted by Jeran Stratford, 9 days ago
Last Reply by Jeran Stratford 9 days ago

HeartShare on BDC 1

Welcome to BDC and Meeting Videos from May 6th 2024 11am

Posted by Nathalie Volkheimer, 2 months ago
Last Reply by Nathalie Volkheimer 2 months ago

TOPMed Fellows 1

TOPMed Fellowship Orientation

Posted by Amber Voght, 2 months ago
Last Reply by Amber Voght 2 months ago

RECOVER on BDC 0

RMIP Resource Hub

Welcome! Start here. 4

BDC Orientation Meeting #1

Posted by Jeran Stratford, 7 days ago
Last Reply by Jeran Stratford 7 days ago
Welcome!

Posted by Jeran Stratford, about 2 months ago
Last Reply by Jeran Stratford about 2 months ago
Data Readiness Checklist

Posted by Mike Enger, 29 days ago
Last Reply by Mike Enger 29 days ago
RMIP - Data Management Plan

Posted by Jeran Stratford, 3 months ago
Last Reply by Jeran Stratford 3 months ago

Phase 1 - Preparation 2

Supporting Documentation Guidance

Posted by Mike Enger, 22 days ago
Last Reply by Mike Enger 22 days ago
De-Identification Guidance

Posted by Mike Enger, about 2 months ago
Last Reply by Mike Enger about 2 months ago

Phase 2 - Aggregation 5

File Tagging Guidance

Posted by Mike Enger, 28 days ago
Last Reply by Mike Enger 28 days ago
Uploading Data to BDC

Posted by Mike Enger, about 1 month ago
Last Reply by Mike Enger about 1 month ago
What is Raw Data?

Posted by Mike Enger, about 1 month ago
Last Reply by Mike Enger about 1 month ago
File Naming Guidance

Posted by Mike Enger, about 2 months ago
Last Reply by Mike Enger about 2 months ago
RMIP Data Landscape Codes

Posted by Jeran Stratford, about 2 months ago
Last Reply by Jeran Stratford about 2 months ago

Phase 3 - Harmonization 1

Harmonizing Data on BDC

Posted by Mike Enger, 29 days ago
Last Reply by Mike Enger 29 days ago

Documents and Templates 6

Documents and Templates

Posted by Jeran Stratford, about 2 months ago
Last Reply by Jeran Stratford about 2 months ago
Template - Seven Bridges Project

Posted by Mike Enger, about 2 months ago
Last Reply by Mike Enger about 2 months ago
Template - Data Manifest

Posted by Jeran Stratford, about 2 months ago
Last Reply by Jeran Stratford about 2 months ago
Template - Sample Manifest

Posted by Jeran Stratford, about 2 months ago
Last Reply by Jeran Stratford about 2 months ago
Template - Data Dictionary

Posted by Jeran Stratford, about 2 months ago
Last Reply by Jeran Stratford about 2 months ago

See all 6 topics

Tutorials 7

Tutorials Index

Posted by Jeran Stratford, about 2 months ago
Last Reply by Jeran Stratford about 2 months ago
Billing on BDC

Posted by Mike Enger, 27 days ago
Last Reply by Mike Enger 27 days ago
Copying Files Between Projects

Posted by Mike Enger, 28 days ago
Last Reply by Mike Enger 28 days ago
Analyzing Data on BDC

Posted by Mike Enger, 29 days ago
Last Reply by Mike Enger 29 days ago
Tutorial Video - Setup and Configuration of the Command Line Interface

Posted by Mike Enger, about 2 months ago
Last Reply by Mike Enger about 2 months ago

See all 7 topics

Applications 10

Applications

Posted by Mike Enger, 29 days ago
Last Reply by Mike Enger 29 days ago
Application - Bulk RNAseq Harmonization Workflow

Posted by Mike Enger, about 1 month ago
Last Reply by Mike Enger about 1 month ago
Application - Sanger Sequencing Harmonization Tool

Posted by Mike Enger, about 1 month ago
Last Reply by Mike Enger about 1 month ago
Application - Single Cell Mass Cytometry Harmonization Tool

Posted by Mike Enger, about 1 month ago
Last Reply by Mike Enger about 1 month ago
Application - Macrophage Polarization Harmonization Tool

Posted by Mike Enger, about 1 month ago
Last Reply by Mike Enger about 1 month ago

See all 10 topics

Data Standards 7

Data Standards

Posted by Jeran Stratford, 28 days ago
Last Reply by Jeran Stratford 28 days ago
Data Standards For Clinical and Preclinical Data

Posted by Jeran Stratford, 2 months ago
Last Reply by Jeran Stratford 2 months ago
Data Standards For Imaging

Posted by Jeran Stratford, 2 months ago
Last Reply by Jeran Stratford 2 months ago
Data Standards For Electrophysiology Assays

Posted by Jeran Stratford, 2 months ago
Last Reply by Jeran Stratford 2 months ago
Data Standards For Laboratory Assays

Posted by Jeran Stratford, 2 months ago
Last Reply by Jeran Stratford 2 months ago

See all 7 topics

Workshops & Presentations

Howard University Workshops 6

2023 Spring Bioinformatics Course

Posted by David Roberson, over 1 year ago
Last Reply by David Roberson over 1 year ago
Feedback Survey

Posted by Amber Voght, over 1 year ago
Last Reply by Amber Voght over 1 year ago
Day 2 Recording

Posted by Amber Voght, over 1 year ago
Last Reply by Amber Voght over 1 year ago
Day 1 Recording

Posted by Amber Voght, over 1 year ago
Last Reply by Amber Voght over 1 year ago
Welcome - Introductions, Slides, and Meeting Info

Posted by Amber Voght, over 1 year ago
Last Reply by Aarthi Krishnan over 1 year ago

See all 6 topics

CHARGE Workshop, April 27 3

Welcome!

Posted by Amber Voght, about 2 years ago
Last Reply by Amber Voght about 2 years ago
Full Workshop Materials

Posted by Amber Voght, about 2 years ago
Last Reply by Amber Voght about 2 years ago
Getting added to the Seven Bridges CHARGE billing group

Posted by David Roberson, about 2 years ago
Last Reply by David Roberson about 2 years ago

NDSA Workshop: Starting Cloud-Based Research on BDC 9

Welcome and Introductions

Posted by Amber Voght, about 1 year ago
Last Reply by Widodo Samyono 12 months ago
Slides and Meeting Info

Posted by Amber Voght, about 1 year ago
Last Reply by David Roberson about 1 year ago
Resources for eRA Commons and dbGaP Access

Posted by Cera Fisher, about 1 year ago
Last Reply by Cera Fisher about 1 year ago
Ideas for open SDoH datasets

Posted by David Roberson, about 1 year ago
Last Reply by David Roberson about 1 year ago
New software tools?

Posted by David Roberson, about 1 year ago
Last Reply by David Roberson about 1 year ago

See all 9 topics

PRIDE 1

Introduction to BDC, 06/13/2023

Posted by Amber Voght, about 1 year ago
Last Reply by Amber Voght about 1 year ago

HeartShare Northwestern 1

Northwestern Onboarding Module 01: Platform Essentials

Posted by David Roberson, 10 months ago
Last Reply by David Roberson 10 months ago

PCGC Fellows 4

Introductory Session, 09/26/2023

Posted by Amber Voght, 10 months ago
Last Reply by Cera Fisher 10 months ago
Seven Bridges Office Hours

Posted by Amber Voght, 10 months ago
Last Reply by Amber Voght 10 months ago
Request Pilot Credits

Posted by Amber Voght, 10 months ago
Last Reply by Archana Rai 9 months ago
Seven Bridges Account Instructions

Posted by Amber Voght, 10 months ago
Last Reply by Amber Voght 10 months ago