The Whole Genome Sequencing QC Workflow can be used to perform quality control (QC) and cleaning of bulk RNA sequencing data.
Inputs: This workflow requiresan input sequence data file, typically in FastQ format, and a reference index TAR file (representing the reference sequence used for alignment).
Outputs: The outputs from this workflow include summary data from FastQC and MultiQC, summary data from Picard MarkDuplicates, and the output BAM file containing aligned sequence reads.
Mike Enger
The Whole Genome Sequencing QC Workflow can be used to perform quality control (QC) and cleaning of bulk RNA sequencing data.
Inputs: This workflow requires an input sequence data file, typically in FastQ format, and a reference index TAR file (representing the reference sequence used for alignment).
Outputs: The outputs from this workflow include summary data from FastQC and MultiQC, summary data from Picard MarkDuplicates, and the output BAM file containing aligned sequence reads.
Link to Workflow:
https://platform.sb.biodatacatalyst.nhlbi.nih.gov/public/apps/jkstratforddev/rmip-apps-and-workflows/whole-genome-sequencing-qc